///  @file    TestInternalConsistencyChecks.cs
///  @brief   Tests the internal consistency validation.
///  @author  Frank Bergmann (Csharp conversion)
///  @author  Akiya Jouraku (Csharp conversion)
///  @author  Sarah Keating
 
/// 
///  $Id: TestInternalConsistencyChecks.cs 12949 2011-02-18 13:39:05Z sarahkeating $
///  $HeadURL: http://sbml.svn.sourceforge.net/svnroot/sbml/trunk/libsbml/src/bindings/csharp/test/sbml/TestInternalConsistencyChecks.cs $
/// 
///  ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
/// 
///  DO NOT EDIT THIS FILE.
/// 
///  This file was generated automatically by converting the file located at
///  src/sbml/test/TestInternalConsistencyChecks.cpp
///  using the conversion program dev/utilities/translateTests/translateTests.pl.
///  Any changes made here will be lost the next time the file is regenerated.
/// 
///  -----------------------------------------------------------------------------
///  This file is part of libSBML.  Please visit http://sbml.org for more
///  information about SBML, and the latest version of libSBML.
/// 
///  Copyright 2005-2010 California Institute of Technology.
///  Copyright 2002-2005 California Institute of Technology and
///                      Japan Science and Technology Corporation.
///  
///  This library is free software; you can redistribute it and/or modify it
///  under the terms of the GNU Lesser General Public License as published by
///  the Free Software Foundation.  A copy of the license agreement is provided
///  in the file named "LICENSE.txt" included with this software distribution
///  and also available online as http://sbml.org/software/libsbml/license.html
///  -----------------------------------------------------------------------------


namespace LibSBMLCSTest {

  using libsbml;

  using System;

  using System.IO;

  public class TestInternalConsistencyChecks {
    public class AssertionError : System.Exception 
    {
      public AssertionError() : base()
      {
        
      }
    }


    static void assertTrue(bool condition)
    {
      if (condition == true)
      {
        return;
      }
      throw new AssertionError();
    }

    static void assertEquals(object a, object b)
    {
      if ( (a == null) && (b == null) )
      {
        return;
      }
      else if ( (a == null) || (b == null) )
      {
        throw new AssertionError();
      }
      else if (a.Equals(b))
      {
        return;
      }
  
      throw new AssertionError();
    }

    static void assertNotEquals(object a, object b)
    {
      if ( (a == null) && (b == null) )
      {
        throw new AssertionError();
      }
      else if ( (a == null) || (b == null) )
      {
        return;
      }
      else if (a.Equals(b))
      {
        throw new AssertionError();
      }
    }

    static void assertEquals(bool a, bool b)
    {
      if ( a == b )
      {
        return;
      }
      throw new AssertionError();
    }

    static void assertNotEquals(bool a, bool b)
    {
      if ( a != b )
      {
        return;
      }
      throw new AssertionError();
    }

    static void assertEquals(int a, int b)
    {
      if ( a == b )
      {
        return;
      }
      throw new AssertionError();
    }

    static void assertNotEquals(int a, int b)
    {
      if ( a != b )
      {
        return;
      }
      throw new AssertionError();
    }


    public void test_internal_consistency_check_20306()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      FunctionDefinition fd = m.createFunctionDefinition();
      fd.setId("fd");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20306 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      fd.setMath(ast);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20307()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      FunctionDefinition fd = m.createFunctionDefinition();
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      fd.setMath(ast);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20307 );
      fd.setId("fd");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20419()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      UnitDefinition ud = m.createUnitDefinition();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20419 );
      ud.setId("ud");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20421()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      UnitDefinition ud = m.createUnitDefinition();
      ud.setId("ud");
      Unit u = ud.createUnit();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 4 );
      assertTrue( d.getError(0).getErrorId() == 20421 );
      assertTrue( d.getError(1).getErrorId() == 20421 );
      assertTrue( d.getError(2).getErrorId() == 20421 );
      assertTrue( d.getError(3).getErrorId() == 20421 );
      u.setKind(libsbml.UNIT_KIND_MOLE);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 3 );
      assertTrue( d.getError(0).getErrorId() == 20421 );
      assertTrue( d.getError(1).getErrorId() == 20421 );
      assertTrue( d.getError(2).getErrorId() == 20421 );
      u.setExponent(1.0);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 20421 );
      assertTrue( d.getError(1).getErrorId() == 20421 );
      u.setScale(0);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20421 );
      u.setMultiplier(1.0);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20517()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 20517 );
      assertTrue( d.getError(1).getErrorId() == 20517 );
      c.setId("c");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20517 );
      c.setConstant(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20623()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      c.setConstant(true);
      Species s = m.createSpecies();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 5 );
      assertTrue( d.getError(0).getErrorId() == 20623 );
      assertTrue( d.getError(1).getErrorId() == 20614 );
      assertTrue( d.getError(2).getErrorId() == 20623 );
      assertTrue( d.getError(3).getErrorId() == 20623 );
      assertTrue( d.getError(4).getErrorId() == 20623 );
      s.setId("s");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 4 );
      assertTrue( d.getError(0).getErrorId() == 20614 );
      assertTrue( d.getError(1).getErrorId() == 20623 );
      assertTrue( d.getError(2).getErrorId() == 20623 );
      assertTrue( d.getError(3).getErrorId() == 20623 );
      s.setCompartment("c");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 3 );
      assertTrue( d.getError(0).getErrorId() == 20623 );
      assertTrue( d.getError(1).getErrorId() == 20623 );
      assertTrue( d.getError(2).getErrorId() == 20623 );
      s.setHasOnlySubstanceUnits(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 20623 );
      assertTrue( d.getError(1).getErrorId() == 20623 );
      s.setBoundaryCondition(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20623 );
      s.setConstant(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20706()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Parameter p = m.createParameter();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 20706 );
      assertTrue( d.getError(1).getErrorId() == 20706 );
      p.setId("c");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20706 );
      p.setConstant(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20804()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      InitialAssignment ia = m.createInitialAssignment();
      ia.setSymbol("fd");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20804 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      ia.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20805()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      InitialAssignment ia = m.createInitialAssignment();
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      ia.setMath(ast);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20805 );
      ia.setSymbol("fd");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20907_alg()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      AlgebraicRule r = m.createAlgebraicRule();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20907 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20907_assign()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      AssignmentRule r = m.createAssignmentRule();
      r.setVariable("fd");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20907 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20907_rate()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      RateRule r = m.createRateRule();
      r.setVariable("fd");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20907 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20908()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      AssignmentRule r = m.createAssignmentRule();
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20908 );
      r.setVariable("fd");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_20909()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      RateRule r = m.createRateRule();
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20909 );
      r.setVariable("fd");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21007()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Constraint r = m.createConstraint();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21007 );
      ASTNode ast = libsbml.parseFormula("lambda(x, 2*x)");
      r.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21101()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      r.setReversible(true);
      r.setFast(false);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21101 );
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      sr.setConstant(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21110()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      SpeciesReference sr = r.createProduct();
      sr.setSpecies("s");
      sr.setConstant(true);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 3 );
      assertTrue( d.getError(0).getErrorId() == 21110 );
      assertTrue( d.getError(1).getErrorId() == 21110 );
      assertTrue( d.getError(2).getErrorId() == 21110 );
      r.setId("r");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 21110 );
      assertTrue( d.getError(1).getErrorId() == 21110 );
      r.setReversible(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21110 );
      r.setFast(false);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21116()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      r.setReversible(true);
      r.setFast(false);
      SpeciesReference sr = r.createReactant();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 21116 );
      assertTrue( d.getError(1).getErrorId() == 21116 );
      sr.setSpecies("s");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21116 );
      sr.setConstant(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21117()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      r.setReversible(true);
      r.setFast(false);
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      sr.setConstant(true);
      ModifierSpeciesReference msr = r.createModifier();
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21117 );
      msr.setSpecies("s");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21130()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      r.setReversible(true);
      r.setFast(false);
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      sr.setConstant(true);
      KineticLaw kl = r.createKineticLaw();
      LocalParameter lp = kl.createLocalParameter();
      lp.setId("s");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21130 );
      ASTNode ast = libsbml.parseFormula("2*x");
      kl.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21172()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      r.setReversible(true);
      r.setFast(false);
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      sr.setConstant(true);
      KineticLaw kl = r.createKineticLaw();
      ASTNode ast = libsbml.parseFormula("2*x");
      kl.setMath(ast);
      LocalParameter lp = kl.createLocalParameter();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21172 );
      lp.setId("pp");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21201()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("s");
      ASTNode ast = libsbml.parseFormula("2*x");
      ea.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21201 );
      Trigger t = r.createTrigger();
      t.setPersistent(true);
      t.setInitialValue(false);
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21203()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      ASTNode ast = libsbml.parseFormula("2*x");
      Trigger t = r.createTrigger();
      t.setMath(ast);
      t.setPersistent(true);
      t.setInitialValue(false);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21203 );
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("ea");
      ea.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21209()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("s");
      ASTNode ast = libsbml.parseFormula("2*x");
      ea.setMath(ast);
      Trigger t = r.createTrigger();
      t.setPersistent(true);
      t.setInitialValue(false);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21209 );
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21210()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      ASTNode ast = libsbml.parseFormula("2*x");
      Trigger t = r.createTrigger();
      t.setMath(ast);
      t.setPersistent(true);
      t.setInitialValue(false);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("ea");
      ea.setMath(ast);
      Delay delay = r.createDelay();
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21210 );
      delay.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21213()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("s");
      ASTNode ast = libsbml.parseFormula("2*x");
      Trigger t = r.createTrigger();
      t.setPersistent(true);
      t.setInitialValue(false);
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21213 );
      ea.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21214()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      EventAssignment ea = r.createEventAssignment();
      ASTNode ast = libsbml.parseFormula("2*x");
      ea.setMath(ast);
      Trigger t = r.createTrigger();
      t.setPersistent(true);
      t.setInitialValue(false);
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21214 );
      ea.setVariable("s");
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21225()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("s");
      ASTNode ast = libsbml.parseFormula("2*x");
      ea.setMath(ast);
      Trigger t = r.createTrigger();
      t.setPersistent(true);
      t.setInitialValue(false);
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21225 );
      r.setUseValuesFromTriggerTime(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21226()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("s");
      ASTNode ast = libsbml.parseFormula("2*x");
      ea.setMath(ast);
      Trigger t = r.createTrigger();
      t.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      assertTrue( d.getError(0).getErrorId() == 21226 );
      assertTrue( d.getError(1).getErrorId() == 21226 );
      t.setPersistent(true);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21226 );
      t.setInitialValue(false);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_21231()
    {
      SBMLDocument d = new SBMLDocument(3,1);
      long errors;
      Model m = d.createModel();
      Event r = m.createEvent();
      r.setUseValuesFromTriggerTime(true);
      ASTNode ast = libsbml.parseFormula("2*x");
      Trigger t = r.createTrigger();
      t.setMath(ast);
      t.setPersistent(true);
      t.setInitialValue(false);
      EventAssignment ea = r.createEventAssignment();
      ea.setVariable("ea");
      ea.setMath(ast);
      Priority prior = r.createPriority();
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21231 );
      prior.setMath(ast);
      d.getErrorLog().clearLog();
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99901()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      long dim = 2;
      c.setSpatialDimensions(dim);
      c.setId("c");
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99902()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setCompartmentType("hh");
      c.setId("c");
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99903()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setConstant(true);
      c.setId("c");
      m.addCompartment(c);
      Rule r = m.createAssignmentRule();
      r.setVariable("c");
      r.setFormula("2*3");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 3 );
      d = null;
    }

    public void test_internal_consistency_check_99903_localparam()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Parameter p = new Parameter(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      KineticLaw kl = r.createKineticLaw();
      kl.setFormula("2");
      p.setId("p");
      p.setConstant(false);
      kl.addParameter(p);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99903_param()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Parameter p = new Parameter(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      p.setConstant(true);
      p.setId("c");
      m.addParameter(p);
      Rule r = m.createAssignmentRule();
      r.setVariable("c");
      r.setFormula("2*3");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      d = null;
    }

    public void test_internal_consistency_check_99904()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setId("c");
      c.setMetaId("mmm");
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99904_kl()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      KineticLaw kl = new KineticLaw(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(1,2,false);
      Compartment c = m.createCompartment();
      c.setId("cc");
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      kl.setFormula("2");
      kl.setMetaId("mmm");
      r.setKineticLaw(kl);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_model()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      d.setLevelAndVersion(1,2,false);
      Model m = new Model(2,4);
      Compartment c = m.createCompartment();
      c.setId("cc");
      m.setMetaId("mmm");
      d.setModel(m);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20201 );
      d = null;
    }

    public void test_internal_consistency_check_99904_param()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Parameter p = new Parameter(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      p.setId("p");
      p.setMetaId("mmm");
      m.addParameter(p);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_react()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Reaction r = new Reaction(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      r.setId("r");
      r.setMetaId("mmm");
      m.addReaction(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_rule_alg()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Rule r = new AlgebraicRule(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      r.setMetaId("mmm");
      r.setFormula("2");
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_rule_assign()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Rule r = new AssignmentRule(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      c.setConstant(false);
      r.setVariable("cc");
      r.setFormula("2");
      r.setMetaId("mmm");
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_rule_rate()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Rule r = new RateRule(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      c.setConstant(false);
      r.setVariable("cc");
      r.setFormula("2");
      r.setMetaId("mmm");
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_species()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setCompartment("c");
      s.setId("s");
      s.setMetaId("mmm");
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_speciesRef()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesReference sr = new SpeciesReference(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      Species s = m.createSpecies();
      s.setId("s");
      s.setCompartment("c");
      Reaction r = m.createReaction();
      r.setId("r");
      sr.setSpecies("s");
      sr.setMetaId("mmm");
      r.addProduct(sr);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21101 );
      d = null;
    }

    public void test_internal_consistency_check_99904_unit()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Unit u = new Unit(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      UnitDefinition ud = m.createUnitDefinition();
      ud.setId("ud");
      u.setMetaId("mmm");
      u.setKind(libsbml.UNIT_KIND_MOLE);
      ud.addUnit(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99904_unitdef()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      UnitDefinition u = new UnitDefinition(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      u.setId("ud");
      u.setMetaId("mmm");
      u.createUnit();
      m.addUnitDefinition(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setId("c");
      c.setSBOTerm(2);
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99905_ct()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      CompartmentType ct = new CompartmentType(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,2,false);
      ct.setId("ct");
      ct.setSBOTerm(5);
      m.addCompartmentType(ct);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_delay()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Delay delay = new Delay(2,4);
      Event e = new Event(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,2,false);
      delay.setSBOTerm(5);
      e.setDelay(delay);
      m.addEvent(e);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_species()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setId("s");
      s.setCompartment("c");
      s.setSBOTerm(2);
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_st()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesType ct = new SpeciesType(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,2,false);
      ct.setId("st");
      ct.setSBOTerm(5);
      m.addSpeciesType(ct);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_stoichmath()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      StoichiometryMath sm = new StoichiometryMath(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,2,false);
      Species s = m.createSpecies();
      s.setId("s");
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setCompartment("c");
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createProduct();
      sr.setSpecies("s");
      sm.setSBOTerm(5);
      sr.setStoichiometryMath(sm);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_trigger()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Trigger trigger = new Trigger(2,4);
      Event e = new Event(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,2,false);
      trigger.setSBOTerm(5);
      e.setTrigger(trigger);
      m.addEvent(e);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_unit()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Unit u = new Unit(2,4);
      d.setLevelAndVersion(2,2,false);
      Model m = d.createModel();
      UnitDefinition ud = m.createUnitDefinition();
      ud.setId("ud");
      u.setKind(libsbml.UNIT_KIND_MOLE);
      u.setSBOTerm(9);
      ud.addUnit(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99905_unitdef()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      UnitDefinition u = new UnitDefinition(2,4);
      d.setLevelAndVersion(2,2,false);
      Model m = d.createModel();
      u.setId("ud");
      u.setSBOTerm(9);
      u.createUnit();
      m.addUnitDefinition(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99906()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setId("c");
      c.setUnits("mole");
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99907()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Compartment c = new Compartment(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      c.setId("c");
      c.unsetVolume();
      m.addCompartment(c);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 10103 );
      d = null;
    }

    public void test_internal_consistency_check_99908()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      CompartmentType ct = new CompartmentType(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,1,false);
      ct.setId("ct");
      m.addCompartmentType(ct);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99909()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Constraint ct = new Constraint(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,1,false);
      m.addConstraint(ct);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99910()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Event e = new Event(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(1,2,false);
      Compartment c = m.createCompartment();
      c.setId("cc");
      c.setConstant(false);
      m.addEvent(e);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_ea()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      d.setLevelAndVersion(2,1,false);
      long errors;
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      c.setConstant(false);
      Event e = m.createEvent();
      ASTNode ast = libsbml.parseFormula("2*x");
      Trigger t = e.createTrigger();
      t.setMath(ast);
      EventAssignment ea = new EventAssignment(2,4);
      ea.setVariable("c");
      ea.setSBOTerm(2);
      ea.setMath(ast);
      e.addEventAssignment(ea);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21203 );
      d = null;
    }

    public void test_internal_consistency_check_99911_event()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Event e = new Event(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(2,1,false);
      e.setSBOTerm(2);
      m.addEvent(e);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_fd()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      FunctionDefinition fd = new FunctionDefinition(2,4);
      d.setLevelAndVersion(2,1,false);
      fd.setId("fd");
      fd.setSBOTerm(2);
      m.addFunctionDefinition(fd);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_kl()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      d.setLevelAndVersion(2,1,false);
      long errors;
      Model m = d.createModel();
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createReactant();
      sr.setSpecies("s");
      KineticLaw kl = new KineticLaw(2,4);
      kl.setSBOTerm(2);
      Parameter p = kl.createParameter();
      p.setId("p");
      r.setKineticLaw(kl);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_model()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      d.setLevelAndVersion(2,1,false);
      Model m = new Model(2,4);
      m.setSBOTerm(2);
      d.setModel(m);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 20201 );
      d = null;
    }

    public void test_internal_consistency_check_99911_param()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Parameter p = new Parameter(2,4);
      d.setLevelAndVersion(2,1,false);
      p.setId("p");
      p.setSBOTerm(2);
      m.addParameter(p);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_react()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Reaction r = new Reaction(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setId("r");
      r.setSBOTerm(2);
      m.addReaction(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_rule_alg()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Rule r = new AlgebraicRule(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setSBOTerm(2);
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_rule_assign()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Parameter p = m.createParameter();
      p.setId("p");
      p.setConstant(false);
      Rule r = new AssignmentRule(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setVariable("p");
      r.setSBOTerm(2);
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_rule_rate()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Parameter p = m.createParameter();
      p.setId("p");
      p.setConstant(false);
      Rule r = new RateRule(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setVariable("p");
      r.setSBOTerm(2);
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99911_speciesRef()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesReference sr = new SpeciesReference(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      Species s = m.createSpecies();
      s.setId("s");
      Reaction r = m.createReaction();
      r.setId("r");
      s.setCompartment("c");
      sr.setSpecies("s");
      sr.setSBOTerm(4);
      r.addReactant(sr);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21101 );
      d = null;
    }

    public void test_internal_consistency_check_99912()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      FunctionDefinition fd = new FunctionDefinition(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(1,2,false);
      Compartment c = m.createCompartment();
      c.setId("cc");
      c.setConstant(false);
      m.addFunctionDefinition(fd);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99913()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      InitialAssignment ia = new InitialAssignment(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(1,2,false);
      Compartment c = m.createCompartment();
      c.setId("cc");
      c.setConstant(false);
      m.addInitialAssignment(ia);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99914()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Rule r = new AlgebraicRule(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setVariable("kk");
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99915_alg()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Model m = d.createModel();
      Rule r = new AlgebraicRule(2,4);
      d.setLevelAndVersion(2,1,false);
      r.setUnits("kk");
      m.addRule(r);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99915_assign()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      c.setConstant(false);
      AssignmentRule r = m.createAssignmentRule();
      r.setL1TypeCode(libsbml.SBML_SPECIES_CONCENTRATION_RULE);
      r.setVariable("c");
      r.setFormula("2");
      r.setUnits("mmm");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99915_rate()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      c.setConstant(false);
      RateRule r = m.createRateRule();
      r.setL1TypeCode(libsbml.SBML_SPECIES_CONCENTRATION_RULE);
      r.setFormula("2");
      r.setVariable("c");
      r.setUnits("mmm");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99916_reaction()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createReactant();
      s.setId("s");
      s.setCompartment("c");
      s.setConstant(true);
      sr.setSpecies("s");
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99916_rule()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setId("s");
      s.setCompartment("c");
      s.setConstant(true);
      m.addSpecies(s);
      Rule r = m.createAssignmentRule();
      r.setVariable("s");
      r.setFormula("2");
      errors = d.checkInternalConsistency();
      assertTrue( errors == 2 );
      d = null;
    }

    public void test_internal_consistency_check_99917()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setId("s");
      s.setCompartment("c");
      s.setSpatialSizeUnits("kkk");
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99918()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setId("s");
      s.setCompartment("c");
      s.setSpeciesType("kkk");
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99919()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Species s = new Species(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setId("s");
      s.setCompartment("c");
      s.setHasOnlySubstanceUnits(true);
      m.addSpecies(s);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99920()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesReference sr = new SpeciesReference(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      Species s = m.createSpecies();
      s.setId("s");
      Reaction r = m.createReaction();
      r.setId("r");
      s.setCompartment("c");
      sr.setSpecies("s");
      sr.setId("mmm");
      r.addProduct(sr);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21101 );
      d = null;
    }

    public void test_internal_consistency_check_99921()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesReference sr = new SpeciesReference(2,4);
      d.setLevelAndVersion(2,1,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("c");
      Species s = m.createSpecies();
      s.setId("s");
      Reaction r = m.createReaction();
      r.setId("r");
      s.setCompartment("c");
      sr.setSpecies("s");
      sr.setName("mmm");
      r.addReactant(sr);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 1 );
      assertTrue( d.getError(0).getErrorId() == 21101 );
      d = null;
    }

    public void test_internal_consistency_check_99922()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      SpeciesType ct = new SpeciesType(2,4);
      Model m = d.createModel();
      ct.setId("st");
      d.setLevelAndVersion(2,1,false);
      m.addSpeciesType(ct);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99923()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      StoichiometryMath sm = new StoichiometryMath(2,4);
      Model m = d.createModel();
      d.setLevelAndVersion(1,2,false);
      Species s = m.createSpecies();
      s.setId("s");
      Compartment c = m.createCompartment();
      c.setId("c");
      s.setCompartment("c");
      Reaction r = m.createReaction();
      r.setId("r");
      SpeciesReference sr = r.createProduct();
      sr.setSpecies("s");
      sr.setStoichiometryMath(sm);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99924()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Unit u = new Unit(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      UnitDefinition ud = m.createUnitDefinition();
      ud.setId("ud");
      u.setKind(libsbml.UNIT_KIND_MOLE);
      u.setMultiplier(9);
      ud.addUnit(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

    public void test_internal_consistency_check_99925()
    {
      SBMLDocument d = new SBMLDocument(2,4);
      long errors;
      Unit u = new Unit(2,4);
      d.setLevelAndVersion(1,2,false);
      Model m = d.createModel();
      Compartment c = m.createCompartment();
      c.setId("cc");
      UnitDefinition ud = m.createUnitDefinition();
      ud.setId("ud");
      u.setKind(libsbml.UNIT_KIND_MOLE);
      u.setOffset(9);
      ud.addUnit(u);
      errors = d.checkInternalConsistency();
      assertTrue( errors == 0 );
      d = null;
    }

  }
}
